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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33004227_33032327_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33004227 - 33032327
Intron Length:
28101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGCTCTCTGACT
Flanking Amino Acid:
FAVFLISCSSGAILGRSETQ
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
66.7
0.38
1
65
36.7
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
59.9
0.39
1.7
76.58
40.1

Associated Gene:

Gene:
ACVR2A
Ensembl Gene ID:
ENSAPLG00000011198
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017938
33004172 - 33056486
52315
ENSAPLT00000011718
33004172 - 33057152
52981