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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33043733_33048519_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33043733 - 33048519
Intron Length:
4787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
AACCTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATGGTGTTAACC
Flanking Amino Acid:
TQHAFHIMIEDPGPPPPSPL
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
70.9
0.47
0.9
65.9
40
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
50
-0
2.1
63.63
42.4

Associated Gene:

Gene:
ACVR2A
Ensembl Gene ID:
ENSAPLG00000011198
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011718
33004172 - 33057152
52981