Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33062352_33063140_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33062352 - 33063140

Intron Length:

789

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACCTG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

TTTTTCCTAATT

Flanking Amino Acid:

YNFEKPVVMKAFEHLLQLEL

Intron Amino Acid Position:

375

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

45.4

Major BPS

81.9

0.79

0.9

80.1

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

40.8

-1

3.2

55.8

48.4

Minor BPS

74.5

0.85

1.6

92.26

Associated Gene:

Gene:

ORC4

Ensembl Gene ID:

ENSAPLG00000010668

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011165

33062026 - 33078254

16229