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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33064779_33066237_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33064779 - 33066237
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
KDLRSLNFLLMLAVSNVTVH
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.9
0.67
0.8
77.7
35.6
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
ORC4
Ensembl Gene ID:
ENSAPLG00000010668
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011165
33062026 - 33078254
16229