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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33066793_33068507_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33066793 - 33068507
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
VTVIGLTCRRDILELFEKRV
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.5
0.64
1
80.4
36.2
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
ORC4
Ensembl Gene ID:
ENSAPLG00000010668
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011165
33062026 - 33078254
16229