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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33068660_33069195_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33068660 - 33069195
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CATTTTCTAACT
Flanking Amino Acid:
LAFLLEALRKGNRTSSCPVL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.2
0.57
0.9
72.4
37.7
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
61.2
0.43
1.7
77.11
39.5

Associated Gene:

Gene:
ORC4
Ensembl Gene ID:
ENSAPLG00000010668
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011165
33062026 - 33078254
16229