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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33069245_33070907_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33069245 - 33070907
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCCTTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATATTCTGAATC
Flanking Amino Acid:
LENVVGDKVFGSFAENLAFL
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.8
0.67
0.8
76.3
32.4
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
64.9
0.45
1.4
70.36
34.5

Associated Gene:

Gene:
ORC4
Ensembl Gene ID:
ENSAPLG00000010668
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011165
33062026 - 33078254
16229