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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33071481_33073981_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33071481 - 33073981
Intron Length:
2501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
TCTCTTTTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTCTCTTTTACT
Flanking Amino Acid:
IGPRGSGKTALLNRVLKDLM
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.1
60.7
37.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
78.5
0.64
0.8
73.9
35.4
Minor 5ss
39.7
-1.2
2.9
50.3
45.9
Minor BPS
73.5
0.82
1.6
87.8
37.8

Associated Gene:

Gene:
ORC4
Ensembl Gene ID:
ENSAPLG00000010668
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011165
33062026 - 33078254
16229