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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3312260_3313132_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3312260 - 3313132
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCTC
5'SS Class:
major
3'SS Sequence:
TCTTTTAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
IEVMSLGRCQDNTTATTKSE
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
67.8
43.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.7
0.62
0.9
73.4
34.8
Minor 5ss
40.9
-1
3.4
59.1
45.6
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
TMEFF2
Ensembl Gene ID:
ENSAPLG00000014055
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014678
3234587 - 3339940
105354