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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33152038_33165161_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33152038 - 33165161
Intron Length:
13124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.1
0.74
0.9
80.5
36.7
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
65.5
0.57
1.9
88.83
36

Associated Gene:

Gene:
MBD5
Ensembl Gene ID:
ENSAPLG00000010489
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010936
33151846 - 33203532
51687