About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33165841_33170013_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33165841 - 33170013
Intron Length:
4173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTCTTTACA
Flanking Amino Acid:
RVDQSGVLYISPSGSLLSCL
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
71.3
0.66
1.6
79.84
35.6

Associated Gene:

Gene:
MBD5
Ensembl Gene ID:
ENSAPLG00000010489
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010936
33151846 - 33203532
51687