Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33171104_33174343_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33171104 - 33174343

Intron Length:

3240

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTAATACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

GTGTTTCTAATA

Flanking Amino Acid:

LVLTSPGGGTSATPVVPTRA

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

82.1

24.6

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

75.2

0.57

68.3

41.2

Minor 5ss

31.3

-2.1

2.7

33.5

35.5

Minor BPS

0.12

1.6

63.87

Associated Gene:

Gene:

MBD5

Ensembl Gene ID:

ENSAPLG00000010489

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010936

33151846 - 33203532

51687