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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33192918_33198096_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33192918 - 33198096
Intron Length:
5179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
TACCTTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATACCTTCACT
Flanking Amino Acid:
SCQQNAEEGKVEPEKLKTLT
Intron Amino Acid Position:
1663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
71.6
0.49
0.9
69.8
35.3
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
63.4
0.5
1.9
77.92
44.1

Associated Gene:

Gene:
MBD5
Ensembl Gene ID:
ENSAPLG00000010489
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010936
33151846 - 33203532
51687