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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33198171_33201211_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33198171 - 33201211
Intron Length:
3041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ACAACATTAATT
Flanking Amino Acid:
AYNRARKRNRKSGKLNNHLE
Intron Amino Acid Position:
1687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
82.7
0.74
0.7
76.9
31.8
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
57.4
0.31
1.6
69.48
41.2

Associated Gene:

Gene:
MBD5
Ensembl Gene ID:
ENSAPLG00000010489
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010936
33151846 - 33203532
51687