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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33244870_33250930_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33244870 - 33250930
Intron Length:
6061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTCACTTATTT
Flanking Amino Acid:
KQPKQFIHIQPFNLDNEQPD
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.2
80.2
30.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
86.7
0.82
0.8
84.6
36
Minor 5ss
40.9
-1
2.8
48.3
41.3
Minor BPS
57.6
0.32
1.8
77.17
39.1

Associated Gene:

Gene:
EPC2
Ensembl Gene ID:
ENSAPLG00000010318
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010770
33230320 - 33269597
39278