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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33251077_33252444_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
33251077 - 33252444
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTGC
5'SS Class:
weak_major
3'SS Sequence:
TATTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAATA
Flanking Amino Acid:
DRLEKASSSQLVTLQEAKLL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
65.8
41.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.6
0.76
0.7
82
29.5
Minor 5ss
57.7
0.26
2
70.7
39.7
Minor BPS
65
0.47
1.4
70.02
36.5

Associated Gene:

Gene:
EPC2
Ensembl Gene ID:
ENSAPLG00000010318
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010770
33230320 - 33269597
39278