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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33256462_33258047_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33256462 - 33258047
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
TTATTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTC
Flanking Amino Acid:
RRRAGCQYYAPRLDQINSPY
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
71
35.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
84.2
30.5
Minor 5ss
42.5
-0.8
3.2
66.3
44.6
Minor BPS
73.1
0.7
1.5
81.83
32.8

Associated Gene:

Gene:
EPC2
Ensembl Gene ID:
ENSAPLG00000010318
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010770
33230320 - 33269597
39278