About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33258194_33258297_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
33258194 - 33258297

Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACAATTG

5'SS Class:
major

3'SS Sequence:
TTTTTTTAATCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAA

U12 Branch Point Sequence:
CTTTTTTTAATC

Flanking Amino Acid:
FARRRVGRGGRVIMDRISTE

Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.7
0.53
1.1
66
40.6

Major BPS
87.3
0.93
0.8
78
36.5

Major PPT
84.6
0.78
0.9
86.5
31.5

Minor 5ss
39.8
-1.1
3.4
55.8
48.4

Minor BPS
74.8
0.76
1.1
77
33.7

Associated Gene:

Gene:
EPC2

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

33230320 - 33269597
39278