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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33291331_33294602_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33291331 - 33294602
Intron Length:
3272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCGTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGAGTTTTAATT
Flanking Amino Acid:
YNACAKPIVKDVLEGYNGTI
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.8
76.3
32.3
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
62.6
0.47
1.3
72.55
39.1

Associated Gene:

Gene:
KIF5C
Ensembl Gene ID:
ENSAPLG00000005832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006106
33280769 - 33343435
62667