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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33301622_33302503_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33301622 - 33302503
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TATTCCTCACGA
Flanking Amino Acid:
YLDKIRDLLDVSKTNLAVHE
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
50.8
0.02
2.1
68.81
43.4

Associated Gene:

Gene:
KIF5C
Ensembl Gene ID:
ENSAPLG00000005832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006106
33280769 - 33343435
62667