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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33302560_33303487_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33302560 - 33303487
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGGA
5'SS Class:
major
3'SS Sequence:
TGCATATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGCCTCTAAACT
Flanking Amino Acid:
EDKNRVPYVKGCTERFVSSP
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
57.5
41.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.4
0.57
1
65.8
44.4
Minor 5ss
26.9
-2.7
3.7
38.1
46.8
Minor BPS
58.6
0.35
1.7
73.56
43.3

Associated Gene:

Gene:
KIF5C
Ensembl Gene ID:
ENSAPLG00000005832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006106
33280769 - 33343435
62667