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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33314221_33316431_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33314221 - 33316431
Intron Length:
2211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGAACG
5'SS Class:
major
3'SS Sequence:
TATTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCTATTTCATT
Flanking Amino Acid:
ASLYRQLDDKDDEINQQSQL
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
0.9
66.9
38.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.2
0.77
0.8
78.5
34.2
Minor 5ss
34.4
-1.8
2.8
40.6
45.3
Minor BPS
49.3
0.02
1.9
67.74
44.1

Associated Gene:

Gene:
KIF5C
Ensembl Gene ID:
ENSAPLG00000005832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006106
33280769 - 33343435
62667