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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33320480_33321698_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33320480 - 33321698
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGAGCG
5'SS Class:
major
3'SS Sequence:
TACATCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
QLADELAQKSTVLTTTQREL
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
56.4
41.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.5
0.64
0.9
69.4
41.3
Minor 5ss
32.7
-2
3.4
40.7
45
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
KIF5C
Ensembl Gene ID:
ENSAPLG00000005832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006106
33280769 - 33343435
62667