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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33324049_33326949_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33324049 - 33326949
Intron Length:
2901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
TTTGTCTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTGTCTTCAAAG
Flanking Amino Acid:
LAACQLLISQHEAKIKSLTD
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.2
37
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.5
0.53
1
74.6
34.1
Minor 5ss
55.7
0.19
2.3
66.6
38.8
Minor BPS
58.2
0.12
1.7
64.83
43

Associated Gene:

Gene:
KIF5C
Ensembl Gene ID:
ENSAPLG00000005832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006106
33280769 - 33343435
62667