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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3332408_3333484_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3332408 - 3333484
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCTT
5'SS Class:
major
3'SS Sequence:
TTTTTCGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
GCAGGTGTAACT
Flanking Amino Acid:
HSTNMLEPSCRCDAGYTGQH
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.7
44.5
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
90.3
0.91
0.7
88.7
28.3
Minor 5ss
49.3
-0
2.9
74
42.4
Minor BPS
41.9
-0.5
2.3
56.48
46.2

Associated Gene:

Gene:
TMEFF2
Ensembl Gene ID:
ENSAPLG00000014055
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014678
3234587 - 3339940
105354