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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33331885_33332721_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33331885 - 33332721
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTTGCTGAATC
Flanking Amino Acid:
VQDLTTRVKKSVELDSDDGG
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
80.1
0.68
0.8
73.5
30.7
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
65.2
0.46
1.9
79.19
36.3

Associated Gene:

Gene:
KIF5C
Ensembl Gene ID:
ENSAPLG00000005832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006106
33280769 - 33343435
62667