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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33332827_33335126_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33332827 - 33335126
Intron Length:
2300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTTGAAACT
Flanking Amino Acid:
LEQLTKVHKQLVRDNADLRC
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.1
39.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89
0.88
0.6
84.2
23.7
Minor 5ss
33.5
-1.9
3.5
49
47
Minor BPS
49.7
0.06
2.2
77.06
40.2

Associated Gene:

Gene:
KIF5C
Ensembl Gene ID:
ENSAPLG00000005832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006106
33280769 - 33343435
62667