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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3338233_3338636_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3338233 - 3338636
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAATTTA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TGGACACTAACA
Flanking Amino Acid:
SSDNTTRASTSSSGNFESTE
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
78.6
31.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
94.6
1
0.6
88.2
29.1
Minor 5ss
39.5
-1.2
2.8
50.2
46
Minor BPS
48.8
-0.1
2
63.45
41.9

Associated Gene:

Gene:
TMEFF2
Ensembl Gene ID:
ENSAPLG00000014055
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014678
3234587 - 3339940
105354