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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33434450_33435733_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33434450 - 33435733
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
TTATTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTGAATA
Flanking Amino Acid:
VKDIVYLHPSTTPFPHGFKC
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
60.4
44.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.7
0.85
0.7
85.6
28.8
Minor 5ss
41.9
-0.9
2.8
55.9
42
Minor BPS
62.1
0.37
1.6
75.29
35.4

Associated Gene:

Gene:
LYPD6
Ensembl Gene ID:
ENSAPLG00000006742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006989
33414668 - 33439559
24892