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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33435833_33438224_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33435833 - 33438224
Intron Length:
2392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TGTCAGGTAAAC
Flanking Amino Acid:
RWAPDVYCPRGTRYCFSQHM
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
61.1
0.28
1
67
29.8
Major PPT
74.2
0.54
0.9
65.7
41
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
38.9
-0.8
2.6
55.09
42.3

Associated Gene:

Gene:
LYPD6
Ensembl Gene ID:
ENSAPLG00000006742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006989
33414668 - 33439559
24892