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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33438356_33439397_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33438356 - 33439397
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
ATTTTCCAAATA
Flanking Amino Acid:
CTYVKHEEYKVCTSCCEGSI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
52.1
0.06
1.9
69.79
36.8

Associated Gene:

Gene:
LYPD6
Ensembl Gene ID:
ENSAPLG00000006742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006989
33414668 - 33439559
24892