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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33450238_33451611_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33450238 - 33451611
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTCCACCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
TCTTTTTCCACC
Flanking Amino Acid:
DFIDPSSGLAFFGPYTNNTL
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.8
36
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
76.9
0.61
0.8
71
34.9
Minor 5ss
45.8
-0.4
2.8
69.7
40.4
Minor BPS
49.5
-0
1.9
65.33
41

Associated Gene:

Gene:
MMADHC
Ensembl Gene ID:
ENSAPLG00000006746
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007019
33450043 - 33460131
10089