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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33453714_33454800_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33453714 - 33454800
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATAAAAT
Flanking Amino Acid:
VQACPQLLQKDFELMFPDVN
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
84.9
0.79
0.6
84.6
23.3
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
48.2
-0
2
66.26
43.7

Associated Gene:

Gene:
MMADHC
Ensembl Gene ID:
ENSAPLG00000006746
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007019
33450043 - 33460131
10089