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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33454907_33457302_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33454907 - 33457302
Intron Length:
2396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCCTGTTAATA
Flanking Amino Acid:
VMAQYINEFQGADVPQKQQV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.9
82.6
33.6
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
53.9
0.12
2
67.76
39.4

Associated Gene:

Gene:
MMADHC
Ensembl Gene ID:
ENSAPLG00000006746
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007019
33450043 - 33460131
10089