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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33457521_33457747_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33457521 - 33457747
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGACTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAGGCCTTGACT
Flanking Amino Acid:
PHVAATPPDLCPRTVWPDEV
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.2
0.72
0.9
76.1
37.8
Minor 5ss
35.2
-1.7
3
45.1
42.9
Minor BPS
66.5
0.6
1.4
74.19
42.7

Associated Gene:

Gene:
MMADHC
Ensembl Gene ID:
ENSAPLG00000006746
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007019
33450043 - 33460131
10089