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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33540338_33541857_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33540338 - 33541857
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TAATATTTTACA
Flanking Amino Acid:
PETLDSVLKKWKGEIQEFCP
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.7
1.17
0.7
98.4
4.81
Major BPS
69.1
0.48
1
70
32.1
Major PPT
79.5
0.66
0.9
72.9
41.4
Minor 5ss
28.3
-2.5
4.2
48.7
47.5
Minor BPS
53.6
0.11
1.8
66.4
39.7

Associated Gene:

Gene:
RND3
Ensembl Gene ID:
ENSAPLG00000006777
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007028
33537238 - 33548972
11735