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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33541968_33548627_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33541968 - 33548627
Intron Length:
6660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TCTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATGCTGATAATA
Flanking Amino Acid:
RIELSLWDTSGSPYYDNVRP
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
80
0.75
1
78.6
31
Major PPT
86.8
0.83
0.7
81.5
23.5
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
43.7
-0.4
2.1
55.48
37.7

Associated Gene:

Gene:
RND3
Ensembl Gene ID:
ENSAPLG00000006777
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007028
33537238 - 33548972
11735