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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3364386_3369455_R

Intron Information:

Intron Rank:
142757
Intron Class:
major
Intron Phase:
Intron Coordinates:
3364386 - 3369455
Intron Length:
5070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACGA
5'SS Class:
major
3'SS Sequence:
TAACTGTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTCATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
64.5
41.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
68.7
0.42
0.9
62.6
39.1
Minor 5ss
31.4
-2.1
3
40.1
45.3
Minor BPS
69
0.67
1.5
82.33
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024086
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035054
3363011 - 3369546
6536