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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33646953_33647642_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33646953 - 33647642
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
GTCTCCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAC
U12 Branch Point Sequence:
GTCTCCATTACA
Flanking Amino Acid:
TAVITFLKPGVANGFVRSTK
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.7
35.5
Major BPS
66
0.4
1.1
57.8
38.6
Major PPT
76.7
0.6
0.9
69.3
35.6
Minor 5ss
43.8
-0.7
3.3
63.6
48.1
Minor BPS
55.7
0.17
2
69.48
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006787
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033822
33640403 - 33649792
9390