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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33646953_33648961_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33646953 - 33648961
Intron Length:
2009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAC
U12 Branch Point Sequence:
GTCTCCATTACA
Flanking Amino Acid:
QALLAFEDAEVANGFVRSTK
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
66
0.4
1.1
57.8
38.6
Major PPT
76.7
0.6
0.9
69.3
35.6
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
55.7
0.17
2
69.48
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006787
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030646
33640403 - 33649792
9390