Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33681821_33682464_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33681821 - 33682464

Intron Length:

644

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TTGCTCTGTAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGTGAAT

U12 Branch Point Sequence:

TGCTCTGTAAAG

Flanking Amino Acid:

ELTDAHLAIVSRLTGEEGKE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.4

38.7

Major BPS

46.7

-0.2

1.6

55.4

48.1

Major PPT

65.8

0.36

1.1

66.9

38.5

Minor 5ss

25.2

-2.9

3.2

43.6

Minor BPS

48.3

-0.2

2.2

56.87

44.7

Associated Gene:

Gene:

RIF1

Ensembl Gene ID:

ENSAPLG00000007092

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020939

33681723 - 33710109

28387

ENSAPLT00000007400

33681723 - 33710109

28387