Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33687505_33688757_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33687505 - 33688757

Intron Length:

1253

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGATTTT

5'SS Class:

major

3'SS Sequence:

GTTTTTCTTCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

TGTTGATTAAAA

Flanking Amino Acid:

SLIDNFALNPDILCSAKRLK

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

81.2

33.8

Major BPS

76.9

0.67

66.3

40.4

Major PPT

77.5

0.62

75.9

38.4

Minor 5ss

44.1

-0.6

3.3

66.4

45.1

Minor BPS

0.09

2.1

70.99

40.5

Associated Gene:

Gene:

RIF1

Ensembl Gene ID:

ENSAPLG00000007092

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020939

33681723 - 33710109

28387

ENSAPLT00000007400

33681723 - 33710109

28387