Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33689743_33690577_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33689743 - 33690577

Intron Length:

835

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTAAAA

5'SS Class:

major

3'SS Sequence:

TCCCAACACTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

TAACTTTCAACT

Flanking Amino Acid:

LGLANPAQKSGSYPFASPAT

Intron Amino Acid Position:

399

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

71.5

33.3

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

62.4

0.28

0.9

58.6

36.1

Minor 5ss

38.9

-1.2

2.8

48.9

46.9

Minor BPS

0.3

1.5

71.67

38.8

Associated Gene:

Gene:

RIF1

Ensembl Gene ID:

ENSAPLG00000007092

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020939

33681723 - 33710109

28387

ENSAPLT00000007400

33681723 - 33710109

28387