Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33691105_33691356_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33691105 - 33691356

Intron Length:

252

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATCTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

ATACTTTTATCT

Flanking Amino Acid:

GFIAIGKEVPDSMLNSIWKD

Intron Amino Acid Position:

494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.8

86.3

28.9

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

86.1

0.81

0.7

81.8

29.8

Minor 5ss

39.6

-1.2

3.2

55.5

42.8

Minor BPS

56.7

0.29

1.5

72.22

38.6

Associated Gene:

Gene:

RIF1

Ensembl Gene ID:

ENSAPLG00000007092

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020939

33681723 - 33710109

28387

ENSAPLT00000007400

33681723 - 33710109

28387