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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33697726_33698518_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33697726 - 33698518
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCATAACT
Flanking Amino Acid:
KPLAVFFEKTKLADVPKAYS
Intron Amino Acid Position:
870

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
67.4
0.62
1.6
81.79
39.5

Associated Gene:

Gene:
RIF1
Ensembl Gene ID:
ENSAPLG00000007092
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007400
33681723 - 33710109
28387
ENSAPLT00000020939
33681723 - 33710109
28387