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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33707171_33707459_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33707171 - 33707459
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTATCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTTTTTCTATCC
Flanking Amino Acid:
LKILSSIQAKHITTPTKGFL
Intron Amino Acid Position:
2086

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
88.2
0.86
0.8
81.8
34.9
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
49.5
-0
1.9
65.93
40.3

Associated Gene:

Gene:
RIF1
Ensembl Gene ID:
ENSAPLG00000007092
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007400
33681723 - 33710109
28387