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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33707538_33707649_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33707538 - 33707649
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGAAGT
5'SS Class:
major
3'SS Sequence:
CTGTTATTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTAAATTAATA
Flanking Amino Acid:
PKFKSSKKCLITEMAKESLP
Intron Amino Acid Position:
2112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
71
39
Major BPS
83
0.82
0.8
82
24.9
Major PPT
66.5
0.37
1.1
67
37.4
Minor 5ss
37
-1.5
3.1
51.3
40.3
Minor BPS
53.5
0.11
1.8
67.66
38.1

Associated Gene:

Gene:
RIF1
Ensembl Gene ID:
ENSAPLG00000007092
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007400
33681723 - 33710109
28387