Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33709005_33709888_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33709005 - 33709888

Intron Length:

884

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTCTT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCCTAC

U12 Branch Point Sequence:

CCCTGCCTACCC

Flanking Amino Acid:

KSVDEEKLATDLVEPVVLNA

Intron Amino Acid Position:

2235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

1.1

81.8

38.5

Major BPS

47.5

-0.1

1.3

44.1

40.5

Major PPT

86.5

0.82

0.7

Minor 5ss

45.7

-0.5

2.9

67.7

43.2

Minor BPS

41.9

-0.6

2.2

50.15

46.7

Associated Gene:

Gene:

RIF1

Ensembl Gene ID:

ENSAPLG00000007092

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020939

33681723 - 33710109

28387

ENSAPLT00000007400

33681723 - 33710109

28387