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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33712262_33712680_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33712262 - 33712680
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CTCAACCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCTTTCTCAACC
Flanking Amino Acid:
SVPSHPSTAGKTYRAMYDYM
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
72.3
39.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.2
0.52
0.9
65.4
35.7
Minor 5ss
37
-1.5
2.7
41.3
38.3
Minor BPS
64.4
0.43
1.6
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047162
33712088 - 33715293
3206