About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33712791_33713097_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33712791 - 33713097
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
TAACACAAAACA
Flanking Amino Acid:
NGGFFTSTTTVGYKHAKTIE
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
84
0.76
0.7
79.7
25.7
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
44.6
-0.4
2
57.59
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047162
33712088 - 33715293
3206